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CHANGES.txtH A D06-Feb-2010230.7 KiB5,9004,934

COPYRIGHT.txtH A D06-Feb-20102.8 KiB7455

Jmol.jsH A D06-Feb-201054.3 KiB1,6491,270

JmolApplet.jarH A D06-Feb-20101.6 MiB

JmolApplet0.jarH A D06-Feb-2010739.8 KiB

JmolApplet0_Console.jarH A D06-Feb-201016 KiB

JmolApplet0_Minimize.jarH A D06-Feb-201039.6 KiB

JmolApplet0_Popup.jarH A D06-Feb-201033.3 KiB

JmolApplet0_Quantum.jarH A D06-Feb-20109.7 KiB

JmolApplet0_ReadersCifPdb.jarH A D06-Feb-201016.1 KiB

JmolApplet0_ReadersMolXyz.jarH A D06-Feb-20104.5 KiB

JmolApplet0_ReadersMore.jarH A D06-Feb-201096.4 KiB

JmolApplet0_ReadersXml.jarH A D06-Feb-201025.4 KiB

JmolApplet0_ShapeBio.jarH A D06-Feb-201054.3 KiB

JmolApplet0_ShapeSpecial.jarH A D06-Feb-201046.5 KiB

JmolApplet0_ShapeSurface.jarH A D06-Feb-2010126.3 KiB

JmolApplet0_Smiles.jarH A D06-Feb-20107.8 KiB

JmolApplet0_Symmetry.jarH A D06-Feb-201046.1 KiB

JmolApplet0_i18n_ar.jarH A D06-Feb-201010.2 KiB

JmolApplet0_i18n_ca.jarH A D06-Feb-201020.3 KiB

JmolApplet0_i18n_cs.jarH A D06-Feb-201020.5 KiB

JmolApplet0_i18n_da.jarH A D06-Feb-201010 KiB

JmolApplet0_i18n_de.jarH A D06-Feb-201020 KiB

JmolApplet0_i18n_el.jarH A D06-Feb-20103.7 KiB

JmolApplet0_i18n_en_GB.jarH A D06-Feb-201014.2 KiB

JmolApplet0_i18n_es.jarH A D06-Feb-201020.2 KiB

JmolApplet0_i18n_et.jarH A D06-Feb-20106.8 KiB

JmolApplet0_i18n_fr.jarH A D06-Feb-201018.6 KiB

JmolApplet0_i18n_hu.jarH A D06-Feb-201020.4 KiB

JmolApplet0_i18n_it.jarH A D06-Feb-201017.6 KiB

JmolApplet0_i18n_ko.jarH A D06-Feb-201018.1 KiB

JmolApplet0_i18n_nb.jarH A D06-Feb-20109.6 KiB

JmolApplet0_i18n_nl.jarH A D06-Feb-201019.4 KiB

JmolApplet0_i18n_pl.jarH A D06-Feb-201013.7 KiB

JmolApplet0_i18n_pt.jarH A D06-Feb-201013.7 KiB

JmolApplet0_i18n_pt_BR.jarH A D06-Feb-201020.3 KiB

JmolApplet0_i18n_sl.jarH A D06-Feb-20103.3 KiB

JmolApplet0_i18n_sv.jarH A D06-Feb-201010.1 KiB

JmolApplet0_i18n_tr.jarH A D06-Feb-201020.2 KiB

JmolApplet0_i18n_uk.jarH A D06-Feb-201021.9 KiB

JmolApplet0_i18n_zh_CN.jarH A D06-Feb-201020.3 KiB

JmolApplet0_i18n_zh_TW.jarH A D06-Feb-201020.8 KiB

JmolAppletSigned.jarH A D06-Feb-20101.7 MiB

JmolAppletSigned0.jarH A D06-Feb-2010833.5 KiB

JmolAppletSigned0_Console.jarH A D06-Feb-201018.1 KiB

JmolAppletSigned0_Minimize.jarH A D06-Feb-201042.2 KiB

JmolAppletSigned0_Popup.jarH A D06-Feb-201034.9 KiB

JmolAppletSigned0_Quantum.jarH A D06-Feb-201011.2 KiB

JmolAppletSigned0_ReadersCifPdb.jarH A D06-Feb-201017.5 KiB

JmolAppletSigned0_ReadersMolXyz.jarH A D06-Feb-20105.9 KiB

JmolAppletSigned0_ReadersMore.jarH A D06-Feb-2010100.7 KiB

JmolAppletSigned0_ReadersXml.jarH A D06-Feb-201027.8 KiB

JmolAppletSigned0_ShapeBio.jarH A D06-Feb-201058 KiB

JmolAppletSigned0_ShapeSpecial.jarH A D06-Feb-201048.9 KiB

JmolAppletSigned0_ShapeSurface.jarH A D06-Feb-2010131 KiB

JmolAppletSigned0_Smiles.jarH A D06-Feb-20109.5 KiB

JmolAppletSigned0_Symmetry.jarH A D06-Feb-201048.2 KiB

JmolAppletSigned0_i18n_ar.jarH A D06-Feb-201011.6 KiB

JmolAppletSigned0_i18n_ca.jarH A D06-Feb-201021.7 KiB

JmolAppletSigned0_i18n_cs.jarH A D06-Feb-201021.9 KiB

JmolAppletSigned0_i18n_da.jarH A D06-Feb-201011.4 KiB

JmolAppletSigned0_i18n_de.jarH A D06-Feb-201021.4 KiB

JmolAppletSigned0_i18n_el.jarH A D06-Feb-20105.1 KiB

JmolAppletSigned0_i18n_en_GB.jarH A D06-Feb-201015.6 KiB

JmolAppletSigned0_i18n_es.jarH A D06-Feb-201021.7 KiB

JmolAppletSigned0_i18n_et.jarH A D06-Feb-20108.2 KiB

JmolAppletSigned0_i18n_fr.jarH A D06-Feb-201020 KiB

JmolAppletSigned0_i18n_hu.jarH A D06-Feb-201021.8 KiB

JmolAppletSigned0_i18n_it.jarH A D06-Feb-201019 KiB

JmolAppletSigned0_i18n_ko.jarH A D06-Feb-201019.5 KiB

JmolAppletSigned0_i18n_nb.jarH A D06-Feb-201011 KiB

JmolAppletSigned0_i18n_nl.jarH A D06-Feb-201020.8 KiB

JmolAppletSigned0_i18n_pl.jarH A D06-Feb-201015.1 KiB

JmolAppletSigned0_i18n_pt.jarH A D06-Feb-201015.1 KiB

JmolAppletSigned0_i18n_pt_BR.jarH A D06-Feb-201021.7 KiB

JmolAppletSigned0_i18n_sl.jarH A D06-Feb-20104.7 KiB

JmolAppletSigned0_i18n_sv.jarH A D06-Feb-201011.5 KiB

JmolAppletSigned0_i18n_tr.jarH A D06-Feb-201021.6 KiB

JmolAppletSigned0_i18n_uk.jarH A D06-Feb-201023.3 KiB

JmolAppletSigned0_i18n_zh_CN.jarH A D06-Feb-201021.7 KiB

JmolAppletSigned0_i18n_zh_TW.jarH A D06-Feb-201022.2 KiB

LEAME.txtH A D06-Feb-20106.8 KiB150127

LICENSE.txtH A D06-Feb-201026.3 KiB505418

README.txtH A D06-Feb-20105.8 KiB131109

jmolH A D06-Feb-2010432 2116

jmol.batH A D06-Feb-2010183 65

jmol.macH A D06-Feb-20102.9 KiB

jmol.shH A D06-Feb-2010849 4029


2===                                  Jmol                                  ===
6Jmol is an open-source molecule viewer and editor written in Java.
8Full information is available at http://www.jmol.org/
10Usage questions and comments should be posted to jmol-users@lists.sourceforge.net
12Development questions, suggestions and comments should be posted
13to jmol-developers@lists.sf.net
16List of files included:
19- README.txt
20	This file.
23	Copyright informations.
25- LICENSE.txt
26	GNU LGPL (terms of license for use and distribution of Jmol).
28- Jmol.jar
29	  Executable file for the Jmol application (a program written in Java).
30	This works as any other program: opens in its own window, can be
31	resized or minimized, admits drag-and-drop, has a top menu bar,
32	can open and save files, etc. It can be run from the command line
33	(particulary, using the shell or batch files described below),
34	but if Java is properly configured in your system, it's usually
35	enough to double-click on this file.
37- jmol
38	(Some kind of batch file to start Jmol application)
40- jmol.bat
41	A batch file to start Jmol application under Windows.
43- jmol.mac
44	(Some kind of batch file to start Jmol application)
46- jmol.sh
47	  A shell script to start Jmol application under Unix-like systems,
48	like Linux, BSD, Solaris and Cygwin for Windows.
50- JmolApplet.jar
51	  The applet, i.e. a version of the program that will only run
52	when embedded in a web page.
53	  This is an all-in-one (or monolithic) file, kept mainly for
54	compatibility with old pages that call it explicitly. Current
55	recommended procedure is to use the split version (JmolApplet0.jar etc.,
56	described below). In particular, Jmol.js uses the split version.
57	  You may wish to use this if you want to keep your website simple or you
58	just want to upload a single jar file whenever new versions are released.
59	However, this will load Jmol somewhat slower than the split versions,
60	as all the program components must get loaded onto a user's machine
61	before any structure is displayed.
62	  To invoke JmolApplet.jar from Jmol.js, either:
63	a) put it in the folder containing the HTML page requiring it and
64		do not use jmolInitialize()
65	or
66	b) identify it explicitly in jmolInitialize(), for example:
67		jmolInitialize("folder-containing-jar-files", "JmolApplet.jar")
69- JmolAppletSigned.jar
70	  An equivalent version of the applet, but this is a "signed" or
71	"trusted" applet (a term in Java security language). This means it
72	must be authorized by the web page visitor for it to run, but then
73	it will have less security restrictions for file access. For example,
74	it can access files on any part of the user's computer or from any
75	other web server.
76	  Typically users get a message asking if they want to accept the
77	"certificate" or if they "trust" the applet, but this security feature
78	is not always enabled. If you decide to use JmolAppletSigned.jar
79	you should keep this in mind.
80	  Other than reading files, Jmol does not currently utilize other capabilities
81	of signed applets, such as accessing the System clipboard or writing files.
82	Use only if you know what you are doing and have considered the security issues.
83	  To invoke JmolAppletSigned.jar from Jmol.js, use:
84		jmolInitialize("folder-containing-jar-files", "JmolAppletSigned.jar")
86- Jmol.js
87	  The utilities library, written in JavaScript language, that assists in
88	the preparation of web pages that use Jmol applet, without the need to
89	know and write detailed JmolApplet code.
90	  This library uses by default the split version of the applet (either
91	unsigned or signed).
92	  Fully documented at http://jmol.org/jslibrary/
94- JmolApplet0.jar  and
95  JmolApplet0(severalSuffixes).jar
96	  The applet is divided up into several pieces according to their function,
97	so that if a page does not require a component, that component is
98	not downloaded from the server. It is still recommended that you put
99	all JmolApplet0*.jar files on your server, even if your page does not use
100	the capabilities provided by some of the files, because the pop-up menu
101	and Jmol console both allow users to access parts of Jmol you might
102	not have considered.
103	  The set of these files is equivalent to the single JmolApplet.jar.
104	  This split version is the one that will be used by default if you use
105	Jmol.js. For that, use the simplest form of jmolInitialize(), just
106	indicating the folder containing the set of jar files:
107		jmolInitialize("folder-containing-jar-files")
108	for example,
109		jmolInitialize(".")
110			(if jar files are in the same folder as the web page)
111		jmolInitialize("../jmol")
112			(if jar files are in a parallel folder, named 'jmol')
114- JmolAppletSigned0.jar  and
115  JmolAppletSigned0(severalSuffixes).jar
116	  The signed version of the split applet. This version allows the user
117	to access files anywhere on the computer and from any location on the web.
118	Typically, users get a message asking if they want to accept the certificate
119	for **each** of the (currently 16) loadable jar files. For this reason, this
120	version may not be of general use.
121	  The set of these files is equivalent to the single JmolAppletSigned.jar.
122	  To use this with Jmol.js, use either:
123	a) jmolInitialize("folder-containing-jar-files", true)
124	or
125	b) jmolInitialize("folder-containing-jar-files", "JmolAppletSigned0.jar")
128Given the descriptions, you will realize that the distribution package contains
1294 full copies of the applet (signed or unsigned, split or not).