META-INF/
META-INF/MANIFEST.MF
org/
org/jmol/
org/jmol/adapter/
org/jmol/adapter/readers/
org/jmol/adapter/readers/xml/
org/jmol/adapter/readers/xml/XmlArgusReader$ArgusHandler.class
<Unknown>
package org.jmol.adapter.readers.xml
 org.jmol.adapter.readers.xml.XmlArgusReader$ArgusHandler extends org.jmol.adapter.readers.xml.XmlReader$JmolXmlHandler {
	private final org.jmol.adapter.readers.xml.XmlArgusReader this$0
	void <init> (org.jmol.adapter.readers.xml.XmlArgusReader) 
	void <init> (org.jmol.adapter.readers.xml.XmlArgusReader, org.xml.sax.XMLReader) 
}

org/jmol/adapter/readers/xml/XmlArgusReader.class
<Unknown>
package org.jmol.adapter.readers.xml
public org.jmol.adapter.readers.xml.XmlArgusReader extends org.jmol.adapter.readers.xml.XmlReader {
	String[] argusImplementedAttributes
	String[] keepCharsList
	String atomName1
	String atomName2
	int bondOrder
	int elementContext
	static final int UNSET
	static final int MOLECULE
	static final int ATOM
	static final int BOND
	void <init> () 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, org.xml.sax.XMLReader) 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, netscape.javascript.JSObject) 
	public void processStartElement (java.lang.String, java.lang.String, java.lang.String, java.util.HashMap) 
	int parseBondToken (java.lang.String) 
	public void processEndElement (java.lang.String, java.lang.String, java.lang.String) 
}

org/jmol/adapter/readers/xml/XmlChem3dReader$Chem3dHandler.class
<Unknown>
package org.jmol.adapter.readers.xml
 org.jmol.adapter.readers.xml.XmlChem3dReader$Chem3dHandler extends org.jmol.adapter.readers.xml.XmlReader$JmolXmlHandler {
	private final org.jmol.adapter.readers.xml.XmlChem3dReader this$0
	void <init> (org.jmol.adapter.readers.xml.XmlChem3dReader) 
	void <init> (org.jmol.adapter.readers.xml.XmlChem3dReader, org.xml.sax.XMLReader) 
}

org/jmol/adapter/readers/xml/XmlChem3dReader.class
<Unknown>
package org.jmol.adapter.readers.xml
public org.jmol.adapter.readers.xml.XmlChem3dReader extends org.jmol.adapter.readers.xml.XmlReader {
	String[] chem3dImplementedAttributes
	void <init> () 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, org.xml.sax.XMLReader) 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, netscape.javascript.JSObject) 
	public void processStartElement (java.lang.String, java.lang.String, java.lang.String, java.util.HashMap) 
	public void processEndElement (java.lang.String, java.lang.String, java.lang.String) 
}

org/jmol/adapter/readers/xml/XmlCmlReader$CmlHandler.class
<Unknown>
package org.jmol.adapter.readers.xml
 org.jmol.adapter.readers.xml.XmlCmlReader$CmlHandler extends org.jmol.adapter.readers.xml.XmlReader$JmolXmlHandler {
	private final org.jmol.adapter.readers.xml.XmlCmlReader this$0
	void <init> (org.jmol.adapter.readers.xml.XmlCmlReader) 
	void <init> (org.jmol.adapter.readers.xml.XmlCmlReader, org.xml.sax.XMLReader) 
}

org/jmol/adapter/readers/xml/XmlCmlReader.class
<Unknown>
package org.jmol.adapter.readers.xml
public org.jmol.adapter.readers.xml.XmlCmlReader extends org.jmol.adapter.readers.xml.XmlReader {
	private String[] cmlImplementedAttributes
	private int atomCount
	private org.jmol.adapter.smarter.Atom[] atomArray
	private int bondCount
	private org.jmol.adapter.smarter.Bond[] bondArray
	private int tokenCount
	String[] tokens
	private int nModules
	private int moduleNestingLevel
	private boolean haveMolecule
	private String localSpaceGroupName
	private boolean processing
	protected final int START
	protected final int CML
	protected final int CRYSTAL
	protected final int CRYSTAL_SCALAR
	protected final int CRYSTAL_SYMMETRY
	protected final int CRYSTAL_SYMMETRY_TRANSFORM3
	protected final int MOLECULE
	protected final int MOLECULE_ATOM_ARRAY
	protected final int MOLECULE_ATOM
	protected final int MOLECULE_ATOM_SCALAR
	protected final int MOLECULE_BOND_ARRAY
	protected final int MOLECULE_BOND
	protected final int MOLECULE_FORMULA
	protected final int MOLECULE_ATOM_BUILTIN
	protected final int MOLECULE_BOND_BUILTIN
	protected final int MODULE
	protected final int SYMMETRY
	protected final int LATTICE_VECTOR
	protected int state
	private String scalarDictRef
	private String scalarDictValue
	private String scalarTitle
	private String cellParameterType
	private int moleculeNesting
	private int latticeVectorPtr
	private boolean embeddedCrystal
	private java.util.Properties atomIdNames
	void <init> () 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, org.xml.sax.XMLReader) 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, netscape.javascript.JSObject) 
	public void processStartElement (java.lang.String, java.lang.String, java.lang.String, java.util.HashMap) 
	private void getDictRefValue (java.util.HashMap) 
	public void processEndElement (java.lang.String, java.lang.String, java.lang.String) 
	int parseBondToken (java.lang.String) 
	void breakOutTokens (java.lang.String) 
	void breakOutAtomTokens (java.lang.String) 
	void checkAtomArrayLength (int) 
	void breakOutBondTokens (java.lang.String) 
	void checkBondArrayLength (int) 
	private void createNewAtomSet (java.util.HashMap) 
	public void applySymmetryAndSetTrajectory () 
}

org/jmol/adapter/readers/xml/XmlMolproReader$MolproHandler.class
<Unknown>
package org.jmol.adapter.readers.xml
 org.jmol.adapter.readers.xml.XmlMolproReader$MolproHandler extends org.jmol.adapter.readers.xml.XmlCmlReader$CmlHandler {
	private final org.jmol.adapter.readers.xml.XmlMolproReader this$0
	void <init> (org.jmol.adapter.readers.xml.XmlMolproReader) 
	void <init> (org.jmol.adapter.readers.xml.XmlMolproReader, org.xml.sax.XMLReader) 
	public void startElement (java.lang.String, java.lang.String, java.lang.String, org.xml.sax.Attributes) 
	public void endElement (java.lang.String, java.lang.String, java.lang.String) 
}

org/jmol/adapter/readers/xml/XmlMolproReader.class
<Unknown>
package org.jmol.adapter.readers.xml
public org.jmol.adapter.readers.xml.XmlMolproReader extends org.jmol.adapter.readers.xml.XmlCmlReader {
	static String[] molProImplementedAttributes
	int frequencyCount
	void <init> () 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, org.xml.sax.XMLReader) 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, netscape.javascript.JSObject) 
	public void processStartElement2 (java.lang.String, java.lang.String, java.lang.String, java.util.HashMap) 
	public void processEndElement2 (java.lang.String, java.lang.String, java.lang.String) 
	static void <clinit> () 
}

org/jmol/adapter/readers/xml/XmlOdysseyReader$OdysseyHandler.class
<Unknown>
package org.jmol.adapter.readers.xml
 org.jmol.adapter.readers.xml.XmlOdysseyReader$OdysseyHandler extends org.jmol.adapter.readers.xml.XmlReader$JmolXmlHandler {
	private final org.jmol.adapter.readers.xml.XmlOdysseyReader this$0
	void <init> (org.jmol.adapter.readers.xml.XmlOdysseyReader) 
	void <init> (org.jmol.adapter.readers.xml.XmlOdysseyReader, org.xml.sax.XMLReader) 
}

org/jmol/adapter/readers/xml/XmlOdysseyReader.class
<Unknown>
package org.jmol.adapter.readers.xml
public org.jmol.adapter.readers.xml.XmlOdysseyReader extends org.jmol.adapter.readers.xml.XmlReader {
	String[] odysseyImplementedAttributes
	String modelName
	String formula
	String phase
	void <init> () 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, org.xml.sax.XMLReader) 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, netscape.javascript.JSObject) 
	protected void processStartElement (java.lang.String, java.lang.String, java.lang.String, java.util.HashMap) 
	public void applySymmetryAndSetTrajectory () 
	int parseBondToken (java.lang.String) 
	protected void processEndElement (java.lang.String, java.lang.String, java.lang.String) 
}

org/jmol/adapter/readers/xml/XmlReader$DummyResolver.class
<Unknown>
package org.jmol.adapter.readers.xml
public org.jmol.adapter.readers.xml.XmlReader$DummyResolver extends java.lang.Object implements org.xml.sax.EntityResolver  {
	public void <init> () 
	public org.xml.sax.InputSource resolveEntity (java.lang.String, java.lang.String)  throws org.xml.sax.SAXException 
}

org/jmol/adapter/readers/xml/XmlReader$JmolXmlHandler.class
<Unknown>
package org.jmol.adapter.readers.xml
public org.jmol.adapter.readers.xml.XmlReader$JmolXmlHandler extends org.xml.sax.helpers.DefaultHandler implements org.xml.sax.ErrorHandler  {
	public java.util.HashMap atts
	private final org.jmol.adapter.readers.xml.XmlReader this$0
	public void <init> (org.jmol.adapter.readers.xml.XmlReader) 
	public void <init> (org.jmol.adapter.readers.xml.XmlReader, org.xml.sax.XMLReader) 
	public void setHandler (org.xml.sax.XMLReader, org.jmol.adapter.readers.xml.XmlReader$JmolXmlHandler) 
	public void startDocument () 
	public void endDocument () 
	public void startElement (java.lang.String, java.lang.String, java.lang.String, org.xml.sax.Attributes) 
	private void startElement (java.lang.String, java.lang.String, java.lang.String) 
	public void endElement (java.lang.String, java.lang.String, java.lang.String) 
	public void characters (char[], int, int) 
	public org.xml.sax.InputSource resolveEntity (java.lang.String, java.lang.String, java.lang.String, java.lang.String) 
	public org.xml.sax.InputSource resolveEntity (java.lang.String, java.lang.String) 
	public void error (org.xml.sax.SAXParseException) 
	public void fatalError (org.xml.sax.SAXParseException) 
	public void warning (org.xml.sax.SAXParseException) 
	protected void walkDOMTree (netscape.javascript.JSObject) 
	private void getAttributes (org.xml.sax.Attributes) 
	private void getAttributes (netscape.javascript.JSObject) 
}

org/jmol/adapter/readers/xml/XmlReader.class
<Unknown>
package org.jmol.adapter.readers.xml
public org.jmol.adapter.readers.xml.XmlReader extends org.jmol.adapter.smarter.AtomSetCollectionReader {
	protected org.jmol.adapter.readers.xml.XmlReader parent
	protected org.jmol.adapter.smarter.Atom atom
	String[] implementedAttributes
	protected boolean keepChars
	protected String chars
	public void <init> () 
	public void readAtomSetCollection (java.io.BufferedReader) 
	private org.xml.sax.XMLReader getXMLReader () 
	private org.xml.sax.XMLReader allocateXmlReader14 () 
	private org.xml.sax.XMLReader allocateXmlReaderAelfred2 () 
	private java.lang.Object processXml (org.xml.sax.XMLReader)  throws java.lang.Exception 
	private java.lang.Object getXmlReader () 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, org.xml.sax.XMLReader) 
	protected void parseReaderXML (org.xml.sax.XMLReader) 
	public void readAtomSetCollectionFromDOM (java.lang.Object) 
	private java.lang.Object processXml (netscape.javascript.JSObject) 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, netscape.javascript.JSObject) 
	protected void processStartElement (java.lang.String, java.lang.String, java.lang.String, java.util.HashMap) 
	protected void setKeepChars (boolean) 
	protected void processEndElement (java.lang.String, java.lang.String, java.lang.String) 
}

org/jmol/adapter/readers/xml/XmlXsdReader$XsdHandler.class
<Unknown>
package org.jmol.adapter.readers.xml
 org.jmol.adapter.readers.xml.XmlXsdReader$XsdHandler extends org.jmol.adapter.readers.xml.XmlReader$JmolXmlHandler {
	private final org.jmol.adapter.readers.xml.XmlXsdReader this$0
	void <init> (org.jmol.adapter.readers.xml.XmlXsdReader) 
	void <init> (org.jmol.adapter.readers.xml.XmlXsdReader, org.xml.sax.XMLReader) 
}

org/jmol/adapter/readers/xml/XmlXsdReader.class
<Unknown>
package org.jmol.adapter.readers.xml
public org.jmol.adapter.readers.xml.XmlXsdReader extends org.jmol.adapter.readers.xml.XmlReader {
	String[] xsdImplementedAttributes
	private java.util.BitSet bsBackbone
	private int iChain
	private int iGroup
	private int iAtom
	public void <init> () 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, org.xml.sax.XMLReader) 
	protected void processXml (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection, java.io.BufferedReader, netscape.javascript.JSObject) 
	private void init (org.jmol.adapter.readers.xml.XmlReader, org.jmol.adapter.smarter.AtomSetCollection) 
	private void fin () 
	public void processStartElement (java.lang.String, java.lang.String, java.lang.String, java.util.HashMap) 
	public void processEndElement (java.lang.String, java.lang.String, java.lang.String) 
}