META-INF/MANIFEST.MF
META-INF/SELFSIGN.SF
META-INF/SELFSIGN.RSA
META-INF/
org/
org/jmol/
org/jmol/symmetry/
org/jmol/symmetry/HallInfo$RotationTerm.class
<Unknown>
package org.jmol.symmetry
 org.jmol.symmetry.HallInfo$RotationTerm extends java.lang.Object {
	String inputCode
	String primitiveCode
	String lookupCode
	String translationString
	org.jmol.symmetry.Rotation rotation
	org.jmol.symmetry.Translation translation
	javax.vecmath.Matrix4f seitzMatrix12ths
	boolean isImproper
	int order
	char axisType
	char diagonalReferenceAxis
	boolean allPositive
	private final org.jmol.symmetry.HallInfo this$0
	void <init> (org.jmol.symmetry.HallInfo) 
	void <init> (org.jmol.symmetry.HallInfo, java.lang.String, int, char) 
	java.lang.String dumpInfo () 
	java.lang.String getXYZ (boolean) 
	private void getRotationInfo (java.lang.String, int, char) 
}

org/jmol/symmetry/HallInfo.class
<Unknown>
package org.jmol.symmetry
 org.jmol.symmetry.HallInfo extends java.lang.Object {
	String hallSymbol
	String primitiveHallSymbol
	char latticeCode
	String latticeExtension
	boolean isCentrosymmetric
	int nRotations
	org.jmol.symmetry.HallInfo$RotationTerm[] rotationTerms
	javax.vecmath.Point3i vector12ths
	String vectorCode
	void <init> (java.lang.String) 
	java.lang.String dumpInfo () 
	private java.lang.String getLatticeDesignation () 
	private java.lang.String extractLatticeInfo (java.lang.String) 
	private java.lang.String extractVectorInfo (java.lang.String) 
	private java.lang.String extractRotationInfo (java.lang.String, int, char) 
}

org/jmol/symmetry/PointGroup$Operation.class
<Unknown>
package org.jmol.symmetry
 org.jmol.symmetry.PointGroup$Operation extends java.lang.Object {
	int type
	int order
	int index
	int typeIndex
	javax.vecmath.Vector3f normalOrAxis
	private final org.jmol.symmetry.PointGroup this$0
	void <init> (org.jmol.symmetry.PointGroup) 
	void <init> (org.jmol.symmetry.PointGroup, javax.vecmath.Vector3f, int) 
	void <init> (org.jmol.symmetry.PointGroup, javax.vecmath.Vector3f) 
	java.lang.String getLabel () 
}

org/jmol/symmetry/PointGroup.class
<Unknown>
package org.jmol.symmetry
 org.jmol.symmetry.PointGroup extends java.lang.Object {
	private static final int[] axesMaxN
	private static final int[] nUnique
	private static final int s3
	private static final int s4
	private static final int s5
	private static final int s6
	private static final int s8
	private static final int s10
	private static final int s12
	private static final int firstProper
	private static final int c2
	private static final int c3
	private static final int c4
	private static final int c5
	private static final int c6
	private static final int c8
	private static final int maxAxis
	private int[] nAxes
	private org.jmol.symmetry.PointGroup$Operation[][] axes
	private int nAtoms
	private float radius
	private float distanceTolerance
	private float linearTolerance
	private float cosTolerance
	private String name
	private org.jmol.symmetry.PointGroup$Operation principalAxis
	private org.jmol.symmetry.PointGroup$Operation principalPlane
	private final javax.vecmath.Vector3f vTemp
	private int centerAtomIndex
	private boolean haveInversionCenter
	private final javax.vecmath.Point3f center
	private javax.vecmath.Point3f[] atoms
	private int[] elements
	private static final int ATOM_COUNT_MAX
	int maxElement
	int[] eCounts
	static final int OPERATION_PLANE
	static final int OPERATION_PROPER_AXIS
	static final int OPERATION_IMPROPER_AXIS
	static final int OPERATION_INVERSION_CENTER
	static final String[] typeNames
	int nOps
	String drawInfo
	String drawType
	int drawIndex
	java.util.Hashtable info
	String textInfo
	java.lang.String getName () 
	static org.jmol.symmetry.PointGroup getPointGroup (org.jmol.symmetry.PointGroup, org.jmol.modelset.Atom[], java.util.BitSet, boolean, float, float) 
	private void <init> () 
	private boolean isEqual (org.jmol.symmetry.PointGroup) 
	private boolean set (org.jmol.symmetry.PointGroup, org.jmol.modelset.Atom[], java.util.BitSet, boolean, float, float) 
	private org.jmol.symmetry.PointGroup$Operation setPrincipalAxis (int, int) 
	private org.jmol.symmetry.PointGroup$Operation setPrincipalPlane (int, int) 
	private boolean getAtomsAndElements (org.jmol.modelset.Atom[], java.util.BitSet) 
	private void findInversionCenter () 
	private boolean checkOperation (org.jmol.util.Quaternion, javax.vecmath.Point3f, int) 
	private boolean isLinear (javax.vecmath.Point3f[]) 
	private boolean isParallel (javax.vecmath.Vector3f, javax.vecmath.Vector3f) 
	private boolean isPerpendicular (javax.vecmath.Vector3f, javax.vecmath.Vector3f) 
	private void getElementCounts () 
	private int findCAxes () 
	private void getAllAxes (javax.vecmath.Vector3f) 
	private int getHighestOrder () 
	private boolean checkAxisOrder (int, javax.vecmath.Vector3f, javax.vecmath.Point3f) 
	private void addAxis (int, javax.vecmath.Vector3f) 
	private boolean haveAxis (int, javax.vecmath.Vector3f) 
	private int findPlanes () 
	private int getPlane (int, javax.vecmath.Vector3f, javax.vecmath.Point3f) 
	private void findAdditionalAxes (int) 
	java.lang.Object getInfo (int, boolean, boolean, java.lang.String, int, float) 
	boolean isDrawType (java.lang.String, int) 
	static void <clinit> () 
}

org/jmol/symmetry/Rotation.class
<Unknown>
package org.jmol.symmetry
 org.jmol.symmetry.Rotation extends java.lang.Object {
	String rotCode
	javax.vecmath.Matrix4f seitzMatrix
	javax.vecmath.Matrix4f seitzMatrixInv
	static final org.jmol.symmetry.Rotation[] hallRotationTerms
	void <init> () 
	private void <init> (java.lang.String, java.lang.String) 
	static final org.jmol.symmetry.Rotation lookup (java.lang.String) 
	static void <clinit> () 
}

org/jmol/symmetry/SpaceGroup.class
<Unknown>
package org.jmol.symmetry
 org.jmol.symmetry.SpaceGroup extends java.lang.Object {
	int index
	String hallSymbol
	String hmSymbol
	String hmSymbolFull
	String hmSymbolExt
	String hmSymbolAbbr
	String hmSymbolAlternative
	String hmSymbolAbbrShort
	char ambiguityType
	char uniqueAxis
	char axisChoice
	String intlTableNumber
	String intlTableNumberFull
	String intlTableNumberExt
	org.jmol.symmetry.HallInfo hallInfo
	int latticeParameter
	char latticeCode
	org.jmol.symmetry.SymmetryOperation[] operations
	int operationCount
	boolean doNormalize
	org.jmol.symmetry.SymmetryOperation[] finalOperations
	private static String[] canonicalSeitzList
	java.util.Hashtable xyzList
	String line
	String term
	private static int sgIndex
	private static final org.jmol.symmetry.SpaceGroup[] spaceGroupDefinitions
	void <init> (boolean) 
	private void <init> (java.lang.String) 
	static org.jmol.symmetry.SpaceGroup createSpaceGroup (int, java.lang.String, float[], boolean) 
	static int determineSpaceGroupIndex (java.lang.String) 
	static org.jmol.symmetry.SpaceGroup determineSpaceGroup (java.lang.String, float, float, float, float, float, float, int) 
	int addSymmetry (java.lang.String) 
	void setFinalOperations (javax.vecmath.Point3f[], int, int, boolean) 
	int getOperationCount () 
	javax.vecmath.Matrix4f getOperation (int) 
	java.lang.String getXyz (int, boolean) 
	void newPoint (int, javax.vecmath.Point3f, javax.vecmath.Point3f, int, int, int) 
	java.lang.Object rotateEllipsoid (int, javax.vecmath.Point3f, javax.vecmath.Vector3f[], org.jmol.symmetry.UnitCell, javax.vecmath.Point3f, javax.vecmath.Point3f) 
	static java.lang.String getInfo (java.lang.String, org.jmol.api.SymmetryInterface) 
	java.lang.String dumpInfo (org.jmol.api.SymmetryInterface) 
	java.lang.String getName () 
	java.lang.String getLatticeDesignation () 
	void setLattice (int) 
	private void buildSpaceGroup (java.lang.String) 
	private java.lang.Object dumpCanonicalSeitzList () 
	private static final java.lang.String dumpAll () 
	private static final java.lang.String dumpAllSeitz () 
	private void setLattice (char, boolean) 
	private static final org.jmol.symmetry.SpaceGroup createSpaceGroup (java.lang.String, boolean) 
	private static final org.jmol.symmetry.SpaceGroup determineSpaceGroup (java.lang.String) 
	private static final org.jmol.symmetry.SpaceGroup determineSpaceGroup (java.lang.String, org.jmol.symmetry.SpaceGroup) 
	private static final org.jmol.symmetry.SpaceGroup determineSpaceGroup (java.lang.String, float[]) 
	private static final int determineSpaceGroupIndex (java.lang.String, float, float, float, float, float, float, int) 
	private static final char determineUniqueAxis (float, float, float, float, float, float) 
	private int addOperation (java.lang.String) 
	private void generateOperatorsFromXyzInfo (java.lang.String) 
	private void generateAllOperators (org.jmol.symmetry.HallInfo) 
	private void addSymmetry (java.lang.String, javax.vecmath.Matrix4f) 
	private java.lang.String extractLine () 
	private java.lang.String extractTerm (char) 
	static void <clinit> () 
}

org/jmol/symmetry/Symmetry.class
<Unknown>
package org.jmol.symmetry
public org.jmol.symmetry.Symmetry extends java.lang.Object implements org.jmol.api.SymmetryInterface  {
	private org.jmol.symmetry.PointGroup pointGroup
	private org.jmol.symmetry.SpaceGroup spaceGroup
	private org.jmol.symmetry.SymmetryInfo symmetryInfo
	private org.jmol.symmetry.UnitCell unitCell
	public void <init> () 
	public org.jmol.api.SymmetryInterface setPointGroup (org.jmol.api.SymmetryInterface, org.jmol.modelset.Atom[], java.util.BitSet, boolean, float, float) 
	public java.lang.String getPointGroupName () 
	public java.lang.Object getPointGroupInfo (int, boolean, boolean, java.lang.String, int, float) 
	public void setSpaceGroup (boolean) 
	public int addSpaceGroupOperation (java.lang.String) 
	public void setLattice (int) 
	public java.lang.String getSpaceGroupName () 
	public java.lang.Object getSpaceGroup () 
	public void setSpaceGroup (org.jmol.api.SymmetryInterface) 
	public boolean createSpaceGroup (int, java.lang.String, float[], boolean) 
	public boolean haveSpaceGroup () 
	public int determineSpaceGroupIndex (java.lang.String) 
	public java.lang.String getSpaceGroupInfo (java.lang.String, org.jmol.api.SymmetryInterface) 
	public java.lang.Object getLatticeDesignation () 
	public void setFinalOperations (javax.vecmath.Point3f[], int, int, boolean) 
	public int getSpaceGroupOperationCount () 
	public javax.vecmath.Matrix4f getSpaceGroupOperation (int) 
	public java.lang.String getSpaceGroupXyz (int, boolean) 
	public void newSpaceGroupPoint (int, javax.vecmath.Point3f, javax.vecmath.Point3f, int, int, int) 
	public java.lang.Object rotateEllipsoid (int, javax.vecmath.Point3f, javax.vecmath.Vector3f[], javax.vecmath.Point3f, javax.vecmath.Point3f) 
	public boolean haveUnitCell () 
	public java.lang.String getUnitsymmetryInfo () 
	public void setUnitCell (float[]) 
	public void toCartesian (javax.vecmath.Point3f) 
	public java.lang.Object[] getEllipsoid (float[]) 
	public javax.vecmath.Point3f ijkToPoint3f (int) 
	public void toFractional (javax.vecmath.Point3f) 
	public javax.vecmath.Point3f[] getUnitCellVertices () 
	public javax.vecmath.Point3f getCartesianOffset () 
	public float[] getNotionalUnitCell () 
	public void toUnitCell (javax.vecmath.Point3f, javax.vecmath.Point3f) 
	public void setUnitCellOffset (javax.vecmath.Point3f) 
	public void setOffset (int) 
	public javax.vecmath.Point3f getFractionalOffset () 
	public float getUnitsymmetryInfo (int) 
	public int getModelIndex () 
	public void setModelIndex (int) 
	public boolean getCoordinatesAreFractional () 
	public int[] getCellRange () 
	public java.lang.String getSymmetryInfoString () 
	public java.lang.String[] getSymmetryOperations () 
	public boolean isPeriodic () 
	public void setSymmetryInfo (int, java.util.Hashtable) 
	public float getUnitCellInfo (int) 
	public java.lang.String getUnitCellInfo () 
	public java.lang.Object[] getSymmetryOperationDescription (int, org.jmol.api.SymmetryInterface, javax.vecmath.Point3f, java.lang.String) 
}

org/jmol/symmetry/SymmetryInfo.class
<Unknown>
package org.jmol.symmetry
 org.jmol.symmetry.SymmetryInfo extends java.lang.Object {
	boolean coordinatesAreFractional
	boolean isMultiCell
	String spaceGroup
	String[] symmetryOperations
	String symmetryInfoString
	int modelIndex
	int[] cellRange
	private javax.vecmath.Point3f periodicOriginXyz
	boolean isPeriodic () 
	void <init> () 
	float[] setSymmetryInfo (int, java.util.Hashtable) 
}

org/jmol/symmetry/SymmetryOperation.class
<Unknown>
package org.jmol.symmetry
 org.jmol.symmetry.SymmetryOperation extends javax.vecmath.Matrix4f {
	String xyzOriginal
	String xyz
	boolean doNormalize
	boolean isFinalized
	private javax.vecmath.Point4f temp
	private static final String[] twelfths
	javax.vecmath.Point3f atomTest
	void <init> () 
	void <init> (boolean) 
	void <init> (org.jmol.symmetry.SymmetryOperation, javax.vecmath.Point3f[], int, int, boolean) 
	void doFinalize () 
	java.lang.String getXyz (boolean) 
	void newPoint (javax.vecmath.Point3f, javax.vecmath.Point3f, int, int, int) 
	java.lang.String dumpInfo () 
	static final java.lang.String dumpSeitz (javax.vecmath.Matrix4f) 
	static final java.lang.String dumpCanonicalSeitz (javax.vecmath.Matrix4f) 
	boolean setMatrixFromXYZ (java.lang.String) 
	private float normalizeTwelfths (float) 
	static final java.lang.String getXYZFromMatrix (javax.vecmath.Matrix4f, boolean, boolean, boolean) 
	private static final java.lang.String twelfthsOf (float) 
	private static final java.lang.String xyzFraction (float, boolean, boolean) 
	private void setOffset (javax.vecmath.Point3f[], int, int) 
	private void transformCartesian (org.jmol.symmetry.UnitCell, javax.vecmath.Point3f) 
	javax.vecmath.Vector3f[] rotateEllipsoid (javax.vecmath.Point3f, javax.vecmath.Vector3f[], org.jmol.symmetry.UnitCell, javax.vecmath.Point3f, javax.vecmath.Point3f) 
	public java.lang.Object[] getProduct (org.jmol.symmetry.SymmetryOperation, org.jmol.api.SymmetryInterface, javax.vecmath.Point3f, java.lang.String) 
	public java.lang.Object[] getDescription (org.jmol.api.SymmetryInterface, javax.vecmath.Point3f, java.lang.String) 
	private static java.lang.Object[] getDescription (javax.vecmath.Matrix4f, java.lang.String, org.jmol.api.SymmetryInterface, javax.vecmath.Point3f, java.lang.String) 
	private static void drawLine (java.lang.StringBuffer, java.lang.String, float, javax.vecmath.Point3f, javax.vecmath.Point3f, java.lang.String) 
	private static java.lang.String fcoord (javax.vecmath.Tuple3f) 
	private static java.lang.String fc (float) 
	private static javax.vecmath.Tuple3f approx (javax.vecmath.Tuple3f) 
	private static float approx (float) 
	private static float approx (float, float) 
	public static void normalizeTranslation (javax.vecmath.Matrix4f) 
	static void <clinit> () 
}

org/jmol/symmetry/Translation.class
<Unknown>
package org.jmol.symmetry
 org.jmol.symmetry.Translation extends java.lang.Object {
	char translationCode
	int rotationOrder
	int rotationShift12ths
	javax.vecmath.Point3i vectorShift12ths
	static final String[] latticeTranslationData
	static final int nLatticeTypes
	static final org.jmol.symmetry.Translation[] hallTranslationTerms
	void <init> () 
	void <init> (char, int) 
	private void <init> (char, int, javax.vecmath.Point3i) 
	private void <init> (char, int, int) 
	static final java.lang.String getHallLatticeEquivalent (int) 
	static final int getLatticeIndex (char) 
	static final char getLatticeCode (int) 
	static final java.lang.String getLatticeDesignation (int) 
	static final java.lang.String getLatticeDesignation (char, boolean) 
	static final java.lang.String getLatticeExtension (char, boolean) 
	static void <clinit> () 
}

org/jmol/symmetry/UnitCell$Data.class
<Unknown>
package org.jmol.symmetry
 org.jmol.symmetry.UnitCell$Data extends java.lang.Object {
	double cosAlpha
	double sinAlpha
	double cosBeta
	double sinBeta
	double cosGamma
	double sinGamma
	double volume
	double cA_
	double cB_
	double a_
	double b_
	double c_
	static final double twoP2
	private final org.jmol.symmetry.UnitCell this$0
	void <init> (org.jmol.symmetry.UnitCell) 
	java.lang.Object[] getEllipsoid (float[]) 
}

org/jmol/symmetry/UnitCell.class
<Unknown>
package org.jmol.symmetry
 org.jmol.symmetry.UnitCell extends java.lang.Object {
	static final float toRadians
	static final javax.vecmath.Point3f[] unitCubePoints
	float a
	float b
	float c
	float alpha
	float beta
	float gamma
	boolean isPrimitive
	float[] notionalUnitcell
	private javax.vecmath.Matrix4f matrixCartesianToFractional
	private javax.vecmath.Matrix4f matrixFractionalToCartesian
	private javax.vecmath.Point3f[] vertices
	private javax.vecmath.Point3f cartesianOffset
	private javax.vecmath.Point3f fractionalOffset
	private org.jmol.symmetry.UnitCell$Data data
	void <init> (float[]) 
	final void toCartesian (javax.vecmath.Point3f) 
	final void toFractional (javax.vecmath.Point3f) 
	private final void toFractionalUnitCell (javax.vecmath.Point3f) 
	private static float toFractional (float) 
	final void toUnitCell (javax.vecmath.Point3f, javax.vecmath.Point3f) 
	void setOffset (javax.vecmath.Point3f) 
	void setOffset (int) 
	static javax.vecmath.Point3f ijkToPoint3f (int) 
	final java.lang.String dumpInfo (boolean) 
	javax.vecmath.Point3f[] getVertices () 
	javax.vecmath.Point3f getCartesianOffset () 
	javax.vecmath.Point3f getFractionalOffset () 
	float[] getNotionalUnitCell () 
	float getInfo (int) 
	private void setUnitCell (float[]) 
	java.lang.Object[] getEllipsoid (float[]) 
	private void constructFractionalMatrices () 
	private void calcUnitcellVertices () 
	static void <clinit> () 
}