META-INF/
META-INF/MANIFEST.MF
org/
org/jmol/
org/jmol/smiles/
org/jmol/smiles/InvalidSmilesException.class
<Unknown>
package org.jmol.smiles
public org.jmol.smiles.InvalidSmilesException extends java.lang.Exception {
	public void <init> () 
	public void <init> (java.lang.String) 
	public void <init> (java.lang.Throwable) 
	public void <init> (java.lang.String, java.lang.Throwable) 
}

org/jmol/smiles/PatternMatcher.class
<Unknown>
package org.jmol.smiles
public org.jmol.smiles.PatternMatcher extends java.lang.Object implements org.jmol.api.SmilesMatcherInterface  {
	private int atomCount
	private org.jmol.modelset.ModelSet modelSet
	public void <init> () 
	public void setModelSet (org.jmol.modelset.ModelSet) 
	public java.util.BitSet getSubstructureSet (java.lang.String)  throws java.lang.Exception 
	public java.util.BitSet getSubstructureSet (org.jmol.smiles.SmilesMolecule) 
	private void searchMatch (java.util.BitSet, org.jmol.smiles.SmilesMolecule, int) 
	private void searchMatch (java.util.BitSet, org.jmol.smiles.SmilesMolecule, org.jmol.smiles.SmilesAtom, int, int) 
}

org/jmol/smiles/SmilesAtom.class
<Unknown>
package org.jmol.smiles
public org.jmol.smiles.SmilesAtom extends java.lang.Object {
	private int number
	private String symbol
	private int atomicMass
	private int charge
	private int hydrogenCount
	private int matchingAtom
	private String chiralClass
	private int chiralOrder
	private org.jmol.smiles.SmilesBond[] bonds
	private int bondsCount
	private static final int INITIAL_BONDS
	public static final String DEFAULT_CHIRALITY
	public static final String CHIRALITY_ALLENE
	public static final String CHIRALITY_OCTAHEDRAL
	public static final String CHIRALITY_SQUARE_PLANAR
	public static final String CHIRALITY_TETRAHEDRAL
	public static final String CHIRALITY_TRIGONAL_BIPYRAMIDAL
	public void <init> (int) 
	public void createMissingHydrogen (org.jmol.smiles.SmilesMolecule) 
	public int getNumber () 
	public java.lang.String getSymbol () 
	public void setSymbol (java.lang.String) 
	public int getAtomicMass () 
	public void setAtomicMass (int) 
	public int getCharge () 
	public void setCharge (int) 
	public int getMatchingAtom () 
	public void setMatchingAtom (int) 
	public java.lang.String getChiralClass () 
	public void setChiralClass (java.lang.String) 
	public int getChiralOrder () 
	public void setChiralOrder (int) 
	public int getHydrogenCount () 
	public void setHydrogenCount (int) 
	public int getBondsCount () 
	public org.jmol.smiles.SmilesBond getBond (int) 
	public void addBond (org.jmol.smiles.SmilesBond) 
}

org/jmol/smiles/SmilesBond.class
<Unknown>
package org.jmol.smiles
public org.jmol.smiles.SmilesBond extends java.lang.Object {
	public static final int TYPE_UNKOWN
	public static final int TYPE_NONE
	public static final int TYPE_SINGLE
	public static final int TYPE_DOUBLE
	public static final int TYPE_TRIPLE
	public static final int TYPE_AROMATIC
	public static final int TYPE_DIRECTIONAL_1
	public static final int TYPE_DIRECTIONAL_2
	public static final char CODE_NONE
	public static final char CODE_SINGLE
	public static final char CODE_DOUBLE
	public static final char CODE_TRIPLE
	public static final char CODE_AROMATIC
	public static final char CODE_DIRECTIONAL_1
	public static final char CODE_DIRECTIONAL_2
	private org.jmol.smiles.SmilesAtom atom1
	private org.jmol.smiles.SmilesAtom atom2
	private int bondType
	public void <init> (org.jmol.smiles.SmilesAtom, org.jmol.smiles.SmilesAtom, int) 
	public static int getBondTypeFromCode (char) 
	public org.jmol.smiles.SmilesAtom getAtom1 () 
	public void setAtom1 (org.jmol.smiles.SmilesAtom) 
	public org.jmol.smiles.SmilesAtom getAtom2 () 
	public void setAtom2 (org.jmol.smiles.SmilesAtom) 
	public int getBondType () 
	public void setBondType (int) 
}

org/jmol/smiles/SmilesMolecule.class
<Unknown>
package org.jmol.smiles
public org.jmol.smiles.SmilesMolecule extends java.lang.Object {
	private org.jmol.smiles.SmilesAtom[] atoms
	private int atomsCount
	private org.jmol.smiles.SmilesBond[] bonds
	private int bondsCount
	private static final int INITIAL_ATOMS
	private static final int INITIAL_BONDS
	public void <init> () 
	public org.jmol.smiles.SmilesAtom createAtom () 
	public int getAtomsCount () 
	public org.jmol.smiles.SmilesAtom getAtom (int) 
	public org.jmol.smiles.SmilesBond createBond (org.jmol.smiles.SmilesAtom, org.jmol.smiles.SmilesAtom, int) 
	public int getBondsCount () 
	public org.jmol.smiles.SmilesBond getBond (int) 
}

org/jmol/smiles/SmilesParser.class
<Unknown>
package org.jmol.smiles
public org.jmol.smiles.SmilesParser extends java.lang.Object {
	private org.jmol.smiles.SmilesBond[] ringBonds
	public void <init> () 
	public org.jmol.smiles.SmilesMolecule parseSmiles (java.lang.String)  throws org.jmol.smiles.InvalidSmilesException 
	private void parseSmiles (org.jmol.smiles.SmilesMolecule, java.lang.String, org.jmol.smiles.SmilesAtom)  throws org.jmol.smiles.InvalidSmilesException 
	private org.jmol.smiles.SmilesAtom parseAtom (org.jmol.smiles.SmilesMolecule, java.lang.String, org.jmol.smiles.SmilesAtom, int, boolean)  throws org.jmol.smiles.InvalidSmilesException 
	private void parseRing (org.jmol.smiles.SmilesMolecule, java.lang.String, org.jmol.smiles.SmilesAtom, int)  throws org.jmol.smiles.InvalidSmilesException 
}