Lines Matching refs:state
48 # bug fix: long scripts in setEcho being chopped when saved in state
58 # bug fix: Jmol 11.8.10-11.8.13 will not read state orientation correctly
118 # bug fix: labels offset using set picking select label not saved in state properly;
120 # bug fix: set picking select label shifting label causes jump and not saved in state reproducibly
125 # bug fix: setting perspective model stops animation in state script
136 # that meant state functions _set... were static
141 # a state or in "show functions" so that a state does not
147 # bug fix: data3d_ not working for saving state after functionXYZ
185 # bug fix: isosurface not retrieving exact reference for jvxl files in state
242 # The IMAGE option instructs Jmol to add its state to the JPG image, so when it is
243 # dragged in, Jmol recognizes that and loads the state. Very cool.
250 # bug fix: polyhedra saving in state
259 # bug fix: defaultDirectory should not be part of the state
303 …TODO: load 1crn.pdb;quaternion;quaternion diff;zap 2.1 -- leaves blank model 2.1 and destroys state
318 # bug fix: state for lcaocartoon broken
321 # bug fix: DRAW CIRCLE size may not be correct when restored from state
349 # bug fix: draw OFF in state script is not selective
419 # bug fix: 11.7.43 broke restoration of state having multimodel draw
628 # in terms of the Jmol "state" but in this version I introduce the Variable class that
1020 # bug fix: load {n n n} not saved in state
1333 # bug fix: vibrationperiod set to 0 if vibration off when state saved
1469 # new feature: save [bonds|coordinates|orientation|selected|state|structure] DELETE
1485 # bug fix: stereo not in state
1488 # bug fix: translucency of mapped isosurfaces not saved in state
1602 # bug fix: connect auto not registered in state
1740 # bug fix: draw scale not saved in state for arc or xy arrow
1742 # bug fix: Jmol state command "calculate surfaceDistance WITHIN ({...})" not passing compiler
1889 # bug fix: state definition for lcaoCartoons, isosurface with IDs containing spaces
1895 # bug fix: structure helix|sheet|turn|none {atomExpression} was undocumented and had state issues
2112 # will persist and can be saved in the state (11.5.38 did not allow this)
2125 # bug fix: drawhover not in state
2130 # bug fix: 11.5.39 could break isosurface/pmesh save/write state in certain cases.
2183 # bug fix: ellipsoid translucency not saved in state.
2314 # bug fix: state script fails to save data for atoms created using the quaternion command
2341 # new feature: set quaternionFrame "N" -- for solid state NMR PISEMA 15N chemical shift frame
2396 # new feature: "load" of Jmol state scripts works same as "script" command
2400 # bug fix: 11.5.40 cannot read most state scripts.
2578 # bug fix: load FILTER not saved in state
2622 # bug fix: added connections do not save properly in state
2696 # bug fix: (forwared compatibility) invalid state setting (due to later version) now ignored.
2697 # bug fix: state for draw arrow in multimodel context delivers wrong coordinates
2736 # bug fix: state "set measures angstroms" does not include "select *"
2753 # bug fix: data "model"...end "model" saves state without first line if first line is empty
2931 # NEEDS THOROUGH TESTING, particularly in regard to saving/restoring the state
2934 # bug fix: isosurface model keyword does not carry on to saved state
2935 # bug fix: lcaocartoons do not color properly or get restored from state properly
2950 # bug fix: state saving with rotateSelected spinning spins entire model
2960 # application menu: Write state moved to main export menu; Export PDF to image writing
2971 # application menu: Write state moved to main export menu; Export PDF to image writing
2996 # For full state compatibility, these commands should be given prior to
3041 # bug fix: functions, save/restore state were disabled by bug in 1.5.8
3157 # bug fix: state: calculate hbonds not saved
3158 # bug fix: state: calculate surfaceDistance WITHIN (({....}))
3160 # bug fix: state: selection state "end function" missing semicolon
3163 # bug fix: save state for "color SelectionHalos"
3216 # bug fix: tainted occupancy not saved in state
3218 # bug fix: restore of state does not reset user-defined atom properties
3276 # bug fix: selectionHalo status and color not in state
3287 # bug fix: multiframe draw with labels different for each frame not properly saved in state
3307 # bug fix: dipoleScale not saved in state
3339 # bug fix: load append not saved in state properly
3353 # bug fix: spin on missing in final state function.
3486 # bug fix: hideNotSelected not in state.
3494 # bug fix: scaleAngstromsPerInch not in state
3495 # bug fix: _firstFrame/_lastFrame variables mess up state
3640 # bug fix: state not saved for coloring elements
3641 # bug fix: state not properly representing deleted bonds
3674 # code: set instead of = in measures and labels state
3718 # new feature: Back to "SET" for state definitions of Jmol parameters.
3720 # bug fix: Strings too long in state can cause Eclipse "infinite loop" bug
3771 # bug fix: connect (..) (..) # with implicit "single" causes state to use "partial 0"
3779 # bug fix: new frame title and state
3841 # -- Ramachandran saved in state
3888 # bug fix: hover state not properly showing specific-atom hover labels.
3931 # bug fix: error in state for connect DELETE
3975 # bug fix: Using isosurface within 1.0 @pt1 where pt1 is a draw point save state cannot be restored…
4036 # bug fix: backbone not in state
4127 # new feature: preliminary work on functionalized state
4182 # bug fix for show state for draw in multi-model environment
4259 # bug fix: isosurface of MOs not properly displaying color in saved state
4260 # bug fix: state saving of @ definitions has extra = sign.
4639 # bug fix: state of multi-polymer protein cannot be restored
4712 # bug fix: state save of STRUCTURE misplaced
4766 # bug fix for state after calculate surface, calculate hbonds, configuration, dynamic variable defi…
4787 # bug fix: state for phased atomic orbitals does not preserve red/blue color
4810 # bug fix for multiple draw objects in show state
4862 # bug fix for app not writing state from File...Export menu (app)
4874 # bug fix for select BONDS ({...}) not preserved in state
4875 # bug fix for geosurface not always restored from saved state
4886 # bug fix for geosurface/dots save/restore state exception
4887 # bug fix for save state using "measurements off" instead of "set measurements off"
4928 # bug fix for backgroundModel and save state
4949 # bug fix for label alignments sometimes not being saved properly in the state
4959 # fixes bugs in draw and unicode label state definitions
5014 # bug fixes -- draw state, menu not updating, language submenu
5182 # adds echo script to defined state
5256 # fixes two state bugs:
5257 # 1) dots/geosurface not being saved properly in state
5258 # 2) animation parameters not being saved properly in state
5856 # full state support for "tainting" atom positions using translateSelected or invertSelected
5865 # script xxxx.spt # this is the full state load
5886 # fix for "draw off" not recorded in save state