Lines Matching refs:model
8 # bug fix: drawHover status not reported properly after zap/new model loaded
9 # code: model properties atomCount, bondCount should be private
10 # bug fix: bitsets not properly handled in model deletion
78 # bug fix: code - viewer.getDisplayModelIndex() not used properly when background model is present
91 # bug fix: zshade not resetting properly; now reset off with reset() or load of model
125 # bug fix: setting perspective model stops animation in state script
303 # TODO: load 1crn.pdb;quaternion;quaternion diff;zap 2.1 -- leaves blank model 2.1 and destroys sta…
425 # bug fix: select model=1 does not work (since 11.6.RC17!)
429 # no display, no shapes, no labels, no echos -- just the model data.
455 # bug fix: load trajectory {0 -1 1} not loading any models if first model has 0 atoms
821 # groupID groupindex identify insertion ionic model
864 …%[group]]%[sequence]:%[chain] %%%[altloc]/%[model] #%[atomno]. For non-PDB data, same as %[atomna…
867 # yes M yes model model number
881 # yes yes strucno a unique number for each helix, sheet, or turn in a model, starting with 1.
950 # %[model] %M
993 # --NMR files where you want just one model at a time and, once loaded, want to save the positions
1015 # --optional n is just as for any load -- optional nth model
1024 # new feature: select within(-0.1, true, atomno=3) -- negative distance within model selects atoms …
1097 # bug fix: data "append" does not set model the way load "append" does
1169 # new feature: MO no longer restricted to one per model set; rather, one per MODEL
1457 # code: fixing inappropriate calls to getOpenFileError(), which actually creates the model set.
1746 # bug fix: select model=_modelNumber didn't differentiate between 2.10 and 2.1
1747 # bug fix: select model=0.0 caused infinite loop
1815 # cml reader fix for not applying symmetry to first model
1970 # bug fix: LOAD "..." nn loading of model numbers for PDB files should read real model number, no…
2021 # bug fix: ramachandran/quaternion "reset" not decoupled from model decouple
2022 # code: model orientation saved with model.
2431 # bug fix: echos with active script and a model designation
2432 # and multiple models select even if not displayed because it is not their model
2481 # bug fix: model-based drawing in multiple-model mode using an
2521 # bug fix: zap of quaternion also zaps model inappropriately
2522 # bug fix: zap to one model assigns -1 to currentModelIndex instead of 0
2753 # bug fix: data "model"...end "model" saves state without first line if first line is empty
2774 # bug fix: draw CIRCLE for multiple model sets
2911 # bug fix: zap {atom expression} for not including all atoms in a model in the selection
2919 # file.model number:
2924 # Note that file.model numbers do not change after this.
2929 # removes the first model and leaves the second as "2.1"
2934 # bug fix: isosurface model keyword does not carry on to saved state
2950 # bug fix: state saving with rotateSelected spinning spins entire model
2951 # bug fix: getproperty("chaininfo") for non-biological model causes null pointer exception
2997 # model loading, as they affect all calculations involving Van der Waals
3225 # bug fix: CIF reader not skipping loops with load of a specific model of a model set
3258 # this creates an isosurface for model 1.2 that uses the atomic coordinates of model 1.1!
3273 # bug fix: quaternion/ramachandran/model can show up together if user issues FRAME ALL
3274 # bug fix: frame 1.2 when file 1 only has one model displaying all files
3283 # bug fix: models with turns crash jmol if not first model loaded
3296 # bug fix: calculate hbonds broken in 11.3.58 (missing model field in BioPolymer)
3404 # applet.loadInlineString(String model, String script, boolean isAppend)
3425 # bug fix: data ... end model instead of end "model" causes null pointer exception
3484 # bug fix: setting perspective model resets unit cell on
3510 # loads a given named model from within a zip file.
3513 # loads a given named model from within a zip file within a zip file.
3583 # IGNORE_ERRORS --- process the file and do not stop if some files are not valid model files
3632 # bug fix: adjustable boundbox in multimodel context not specific to model of selected atoms
3781 # new feature: set echo [echoID] MODEL [model number]
3838 # new feature: Ramachandran/Model commands switch between plot and model
3839 # -- one Ramachandran plot per model
3854 # new feature: model-based parallel array calculations:
3855 # x = {atomno=3}.split() # a list, one element for each model
3856 # draw @{x.xyz.sub({1 0 0})} # a set of points, one per model
3863 # new feature: draw object title line number corresponds to model number for multi-model draw objec…
4182 # bug fix for show state for draw in multi-model environment
4183 # bug fix? for background model not available for multiple frame range (e.g. frame 2.0) or after in…
4189 # select within(5.0,true,model=2.1) # TRUE indicates we should check all models
4190 # select within(5.0,false,model=2.1) # FALSE -- only model 2.1
4191 # select within(5.0,model=2.1) # default is FALSE
4347 # scales with the model, so arrow head:atom size ratio remains constant
4800 # bug fix: image offsets in creating JPG image if model has been moved by CTRL-ALT-LEFT drag
4942 # bug fix in frame range 1.0 when file 1 has only one model.
5066 # or the user is manipulating the model with the mouse, and pauses 1 second
5069 # hover now is turned off during spinning or user manipulation of the model
5145 # the model is "molecular" -- the base atom coordinates are correct
5168 # than one model at a time displayed, because there is only one set
5304 # load append ..... # APPENDS the file(s) or model(s) as new frames onto the current set.
5567 # data "model @x"
5899 # tunes select model=