Lines Matching refs:from
201 # bug fix: file save from menu does not pull up dialog
241 # load t.jpg (Or just drag it into the Jmol window from a file directory.
256 # code: dissociation of applet console from jvm12
285 # bug fix: gaussian reader may fail to read MOs from Gaussian 03: AM64L-G03RevC.01 3-Apr-2004
291 # from the 2009 GORDON RESEARCH CONFERENCE ON EDUCATION:
321 # bug fix: DRAW CIRCLE size may not be correct when restored from state
439 # "radius" -- vector normal from local helix point to x
444 # bugfix: gamess readers crashing if keywords missing from basis options or control options
472 # new feature: drag/drop and file menu-open scripts directly into editor, from where they can be ch…
565 # just outputs messages from the print commands in that script
642 # --Array indexing from the back to the front using n <= 0: A[0] A[-1] A[-2].
710 # new feature: complete freedom from lines and "end if, end for, end while" --
1018 # --sets _vibrationName from file's atom set collection name
1026 # new feature: {x y z}.fxyz -- returns fractional from cartesian
1027 # new feature: {x y z}.uxyz -- returns unitcell from cartesian
1029 # new feature: {x y z}.xyz -- returns cartesian from fractional
1105 # new feature: application -s - reads input from System.in (untested)
1135 # bug fix: reading multiple files from a ZIP file collection, Jmol was forcing autobond
1335 # bug fix: application -i option still gives message from "set xxxx"
1396 # quaternion from first two columns of a 3x3 rotation matrix
1397 # bug fix: some quaternions cannot be created from a 3x3, namely:
1554 # bug fix: Some browsers do NOT strip \n from <param> tags, necessitating changes in loadInLine()
1686 # a movie from a sequence of JPEG images
1700 # default {0 0 1} so that just one trajectory is loaded from each file
1771 # -- using SwingUtilities.invokeAndWait() from the commandWatcher thread
1826 # bug fix: draw pointgroup C2 2 not distinguished from draw pointgroup C2 1
1865 # --in addition, allows retrieval of information from another applet
1922 # bug fix: unnecessary refreshes removed from moveto/zoom with time 0
2021 # bug fix: ramachandran/quaternion "reset" not decoupled from model decouple
2036 # bug fix: was reading server path for local path from history in Webexport
2083 # bug fix: Removed stray semicolons from header script comments in webexport templates. They
2094 # theta0 is the the offset angle from 0
2096 # fractionalOffset is the fraction of the distance from {pt1} to {pt2} for the
2238 # bug fix: quaternion construction from matrix error
2300 # and ranging from -1 (opposite direction) to 1 (same direction) for proteins
2312 # bug fix: color of NaN float values changed from "center of color scheme" to GRAY
2379 # Range is from -1 to 1
2445 # the two independent processors. (just to isolate javascript from load commands
2456 # which overrides the default behavior and disallows reading of files from
2516 # bug fix: scaling of VECTOR was from center, not origin
2555 # bug fix: reading output from "set showscript 1"
2671 # bug fix: set picking measure distance not doing callback (from 11.5.23)
2737 # bug fix: labels can change size in returning from antialiasdisplay=true to antialiasdisplay=false
2935 # bug fix: lcaocartoons do not color properly or get restored from state properly
3217 # bug fix: biopolymers have wrong wing vectors (from 11.3.62)
3510 # loads a given named model from within a zip file.
3513 # loads a given named model from within a zip file within a zip file.
3633 # bug fix: Jmol math (x[2])[3] indistinguishable from x[2][3]
3830 # new feature: set atom properties from space-separated string:
3879 # in povray is based on the signed distance from the slab to the atom center.
3999 # They do not carry over from one file to the next.
4047 # bug fix: dipoles moved back into shape from shapespecial
4167 # order to avoid the event queue from stopping itself.
4638 # bug fix: script window using swing thread start not from event queue
4645 # new feature: simple calculation of approximate dipole moment from charge distributions.
4646 # dipole molecular # from file value if provided
4647 # dipole calculate molecular # from "center of gravity" of charges calculation
4661 …"someFile" {mmm nnn 1|0} range x.x where x.x is a maximum distance away from closest atom in the…
4768 # NEW FEATURES from the 2007 Gordon Research Conference on Visualization in Science and Education:
4828 # bug fix for select {*}[0], {*}[-1], etc., which now counts from the end back
4862 # bug fix for app not writing state from File...Export menu (app)
4875 # bug fix for geosurface not always restored from saved state
4905 # code refactoring dissociates Mps.MpsShape from Mps as BioShape
5029 # adds capability to read data from selected fields (white-space delimited columns) in a file
5032 # propertyDataField = 2 # data are in field 2 (second from the left)
5083 # (1) "file:" allows reading of xy data from files for graphing f(x,y)
5134 # now covers all aspects of JavaScript interaction from within Jmol
5171 # adds script: option for callbacks set from within Jmol. That is, callbacks
5197 # putting output into a from commands such as "show" or "getProperty", for instance.
5241 # This is a change from Jmol 10.2 and 11.0, where if you leave
5265 # -- JVXL files created from molecular orbitals will show up with no color
5267 # -- JVXL files created from molecular orbitals will show unwanted cross-over
5268 # surfaces from + to -.
5274 # --fully dissociates geosurface from dots;
5495 # 1.0 + {carbon}.xyz ==> 1 + distance from {0 0 0} to {carbon} center
5600 # angle function accepts from three or four
5612 # from each molecule 1 atom to the average molecule 2 position"
5613 # x2 is a point representing the VECTOR from the "average position of molecule 2"
5623 # They are all the distance from the center of molecule 1
5789 # You can select atoms from an atom expression using [n].
5799 # You can select bonds from an atom expression