Lines Matching refs:angle
416 # bug fix: draw RAMACHANDRAN angle arrow radii too small
438 # "angle" -- rotation around local heix axis for resno i --> i+1
442 # and 360 / angle is the pitch of the helix
638 # string, point, axis-angle/plane/quaternion, atom bitset, bond bitset,
871 # yes f yes phi protein group PHI angle for atom\'s residue (Jmol 11.3.41)
874 # yes p yes psi protein group PSI angle for the atom\'s residue (Jmol 11.3.41)
1565 # if hbondsAngleMinimum is set > 0 (default 90 ?), then that angle is checked
2094 # theta0 is the the offset angle from 0
2220 # Returns a point4f angle-Axis equivalent with x, y, z the normal for the quaternion
2225 # thus, because the negative angle switches the normal:
2229 # but % {1 0 0 0} forces the angle associated with {1 0 0} to be reported
2299 # giving a measure proportional to the difference in local helical axis angle
5598 # adds angle({carbon}[4],{oxygen}[3], {nitrogen}[2])
5600 # angle function accepts from three or four
5602 # the distance, angle, or dihedral relating these points.