Lines Matching refs:all
126 # bug fix: GAMESS reader not reading all vibrational frequencies
134 # local to the applet, with all other functions being static.
194 # bug fix: symop() -- can now be used without "all."
235 # new feature: pt = all.symop(3, {atomno=3})
236 # new feature: sdrawCommands = all.symop(3, {atomno=3},"draw_id")
269 # new feature: Jmol embedded in applications can use WRITE command to create all types of images an…
270 # new feature: VERY COMPACT IDTF export (for U3D conversion; all except background color)
376 # new feature: navX, navY, navZ, navFPS all settable
407 # new feature: all.bin(f0, f1, df) -- binning of data to give an integer array of counts
408 # for example: print {*}.straightness.all.bin(0, 1, 0.05)
507 # print 'there are ' + all.length + ' atoms'
509 # all are implicitly strings. You CAN use "..." but you don't have to,
520 # new feature: MO LIST or SHOW MO LIST display listing of orbitals for all files
525 # new feature: merging of label() and format() functions -- same in all respects.
570 …COORD {first,last,stride} "mdcrd::myfile.trj" defaults to last = -1 ("load all trajectories") not …
575 # "all" equivalent to {*}
580 # new feature: print {xxx}.label.all("xxxx") -- forces array even if only one atom (like "{xxx}.lab…
581 # bug fix: color.all not working properly
582 # bug fix: xxx.all was not forcing array when only one value
619 # --The if, for, while, and function constructs are all about the same, using braces.
632 # --Object-like methods and fields such as {*}.xyz.all.join(" ") and {atomno=3}.radius
685 # and basically all the standard flow syntax of Java and JavaScript:
775 # ans = for(x;{*.ca};x.bonds.length).all.add()
783 # var ave = {*.ca}.boundcount.all.add()
994 # --basically anywhere you want a "trajectory" but don't want to save all that data
1013 # --all features of the load command, but only loads the vibrational information
1014 # --applies {within(loadAtomDataTolerance,xyzcoord)}.vxyz = vibcoord, so to all unit cells
1023 …no=3) -- negative distance within selects atoms based on unitcell coordinates of all atoms involved
1032 # if multiple models are visible, then all these just return as through there were no unit cell.
1061 # with "v", returns all but the matching phrase in string or on any matching list e…
1064 # print script("show spacegroup all").split().find("Hall symbol:").find("primitive","v")
1073 # print script("show spacegroup all").split().find("Hall symbol:")
1129 # code: subclassing Gaussian, QChem, NWChem, Gamess, Jaguar, Psi readers all into MOReader class
1153 # for example: frame ALIGN {*} -- align all frames on center for that frame
1168 # new feature: Spartan reader now reads all models in an energy profile
1170 # new feature: MO command operates on all models in current frame set:
1175 # will generate highest-occupied MO for all models and run through them quickly
1404 # new feature: Jmol.js jmolScriptWaitOutput(script) returns all messages that would
1459 # jmolAppendInlineArray, jmolAppendInlineScript all return load error message
1499 # new feature: all options of isosurface now option for pmesh.
1500 # all pmesh command does is guarantee that if the pmesh data is standard pmesh ASCII data,
1541 # print {*}.myFunc.all
1543 # parenthetical parameters are allowed provided .min, .max, .all are not used
1639 # code: LOAD command ignores all nonrecognized pre-filename keywords
1688 # write frames {*} "all.jpg"
1699 # first,last,step same as in VMD -- 0 for very first trajectory, last -1 meaning "all"
1720 # bug fix: very thin cylinder does not appear at all viewing angles
1859 # --appletName can be * (all applets), > (other applets), . (this applet),
1878 # gets a new-line-separated list of rotational quaternions for all applets with applet names.
2150 # Note: planes, axisAngles, and quaternions are all saved as Token.point4f
2542 # -- turns on, turns off, or deletes all objects of the type starting with "xxx"
2607 # Within a type, a single ! implies all are NOT
2608 # Within a type, a single * implies all are ANY
2655 # all other parameters are optional
2759 # allows setting isosurface values using a block of x y z data, all points for which should be
2911 # bug fix: zap {atom expression} for not including all atoms in a model in the selection
2997 # model loading, as they affect all calculations involving Van der Waals
3005 # To delete all user entries:
3013 # new feature: integration of star, halo, and spacefill code so all behave the same.
3077 # new feature: menu includes all standard color scheme options
3078 # new feature: inline math @{x+3} extended to all commands
3079 # new feature: .sub(), .add(), .mul(), .div() extended to all operand types
3243 # all monster scripts made the same
3246 # bug fix: better checking of scripts involving full run of all scripts
3268 # -- all functionality in new.htm, new2.htm, and new0.htm tested --
3270 # bug fix: draw/isosurface/etc. on/off/delete should operate on all objects
3274 # bug fix: frame 1.2 when file 1 only has one model displaying all files
3297 # bug fix: Jmol not putting structures in for all models in a PDB file
3306 # bug fix: multifile cartoons improperly rendering in all frames
3315 # bug fix: select */4 when "4" is inappropriate returns all instead of none
3333 # but doesn't require listing of all the models.
3380 # new feature: set c? -- displays all Jmol parameters starting with "c" or "_c"
3381 # set _? -- displays all read-only variables (starting with "_")
3431 # bug fix: symop=0NNN not returning all atoms with translation NNN
3448 # bug fix: set of many more (but not all) parameters can accept mathematical expressions
3585 # EXCEPT_FILES --- process all files EXCEPT those given
3800 # if found, ONLY this text is processed and all other text in the file is ignored.
4049 # bug fix: select 0 selects all instead of PDB group 0
4112 # new feature: reset aromatic # sets all aromaticDouble and aromaticSingle back to aromatic
4129 # in general, functions are global -- common to all applets.
4189 # select within(5.0,true,model=2.1) # TRUE indicates we should check all models
4333 # reset ALL # resets all user-created variables
4680 # > all applets except this one
4681 # * all applets
4692 # sync * # synchronize all applets as drivers
4694 # sync > "set echo top left;echo OK" # sends OK to top left of all OTHER applets
4742 # note that xmlReader (SAX reader) is now set to ignore all DOCTYPE declarations
4786 # bug fix: minus-sign "fix" in 11.3.1 broke all {x -y z} notation
5134 # now covers all aspects of JavaScript interaction from within Jmol
5157 # refactoring of all isosurface-related classes
5163 # adds load TRAJECTORY -- for a single file with multiple models all with
5238 # Now if no ID is indicated, the previous ID is used for all commands
5239 # EXCEPT "isosurface delete", which deletes all isosurfaces.
5421 # It will take a bit more to make it all consistent, but the idea
5503 # AND, OR, XOR, and NOT all require conversion to boolean UNLESS both
5509 # {oxygen} and {molecule=1} ==> all oxygen atoms in the first molecule
5513 # x is now the center point of all oxygen atoms in the first molecule
5616 # The following are all equivalent:
5623 # They are all the distance from the center of molecule 1
5633 # Implements ({i j:k m n}) bitset option across all commands
5700 # We are still using () for "embedded expressions" in all other commands.
5738 # simplest way to do it. (Comma means "or" in atom expressions.) In all other
5860 # this all definitely needs some work and discussion in terms of user interface via mouse