Lines Matching refs:n
33 # utilizing user-defined functions of the form @{xxx({n})}
204 # bug fix: compiler error for {xxx}.yy = n \n {xxx}.yy = n
226 # bug fix: grp.property_x = n can change definition of grp
232 # new feature: draw ID xxx SYMOP [n or "-x,y,z"] [optional {atom or position}]
343 # new feature: isosurface select(....) SET n
344 # where n is an integer 1,2,3... that selects which set is to be displayed and
372 # print {*.ca}.label("%n\t%R").add("\t",ap).add("\t",ac);
495 # n = 3
534 # bug fix: set xxxx n where n is an integer fails.
642 # --Array indexing from the back to the front using n <= 0: A[0] A[-1] A[-2].
643 # --Array ranges [n][m], for example A[-3][0]
753 # n = 2
754 # {{atomno > 10}[n+2][n+5]}.radius = 0.3
860 # yes n yes group 3-letter residue code
875 …ly displayed radius -- in SELECT command comparisons ("select radius=n"), integer n implies Rasmol…
900 # W yes PDB residue designator with x, y, z included: [%n]%r %x %y %z (Jmol 11.3.41)
915 # new feature: {xxx}.spacefill = n
916 # new feature: {xxx}.radius = n (same)
943 # %[group] %n
1012 # new feature: load VIBRATION "filename" n .......
1015 # --optional n is just as for any load -- optional nth model
1020 # bug fix: load {n n n} not saved in state
1044 # n = {*}.size
1045 # for (var a = 1; a < n; a = a + 1)
1123 # bug fix: rotate -x n rotates wrong direction
1138 # bug fix: V3000 reader chokes on CHG=n and does not recognize MASS=n
1152 # for example: frame ALIGN {C2} -- align each frame on C2/n where n is a frame number
1222 …new feature: isosurface points can be retrieved using $id[n] where n=0,1,2,3... similar to $draw[n]
1225 # isosurface OBJ "myfilename" n
1226 # where n is an optional pointer to a specific group (starting with 1)
1230 # new feature: isosurface .... map contour [n] [mep|MO homo|etc]
1232 # [n] is optional; defaults to 9
1554 # bug fix: Some browsers do NOT strip \n from <param> tags, necessitating changes in loadInLine()
1947 # where [type] is one of Cs, Ci, Cn, or Sn, where n is an integer or the character "n"
2076 # bug fix: quaternion frame "n" after rotationSelected does not reset NH hydrogen positions
2126 # bug fix: ramachandran for systems including nucleic acids when quaternionFrame = 'n'
2184 # bug fix: local assignment var x = array() followed by x[n] = ... does not work
2186 # bug fix: quaternion frame "n" recognizes file-based H atoms on N for frame definition
2278 # Quaternion left division (relative difference n):
2322 # for example: set pickLabel "%n x = %x, y = %y, z = %z"
2345 # draws x,y,z and n vectors for a quaternion center
2349 # straightness = 2*|n(dq1).dot(n(dq2))| - 1
2378 # and n(dq) = the normal vector associated with this quaternion.
2492 # -- <n> atoms selected!
2517 # bug fix: select n-m:c chain selection inappropriately case sensitive
2610 # new feature: load [file info] FILTER "BIOMOLECULE n;NOSYMMETRY"
2628 # new feature: load [file info] FILTER "BIOMOLECULE n"
2629 # new feature: load [file info] FILTER "[filter string];BIOMOLECULE n"
2649 # SCALE n.m
2814 # new feature: isosurface MAXSET n # removes larger fragment sets
2815 # new feature: isosurface DOWNSAMPLE n # down-factors the number of points in a CUBE file by a fact…
2822 # new feature: minimize STEPS n
3272 # bug fix: select site=n broken
3281 # where [zoomOrZoomFactor] is n, +n, -n, *n, /n, or 0 (to indicate fill screen)
3594 # new feature: load xxx.zip n # where n is the desired file, starting with 1
3697 # bug fix for selecting atoms of atomsets using [-n] or [0]
3921 # n = 2;
3922 # color atoms @{xlist[n]};
3997 # where xxx is the site identifier and n is the site number.
4118 # new feature: fully generalized bond order "partial n.m"
4119 # n = number of lines, up to 5
4125 # new feature: connect may use numeric bond orders, including "partial n.m"
4218 # n = {*}.size
4219 # for (i = 1; i <= n; i = i + 1)
4220 # for (j = i + 1;j <= n; j = j + 1)
4442 # bug fix: Eval RPN processor for list[n] addition operator not doing selection
4523 # bug fix: -g ignored on -n option, even if -w is present
4529 # new feature: lcaoCartoon, mo, isosurface, pmesh: color [translucent [n]|opaque] [colors...]
4653 # new feature: write JPG n "filename" # where n is the quality (<=100)
4743 # bug fix: odydata fix for files with \r\n for line ending
4978 # zoomTo (atom expression) 0+n
4979 # zoomTo (atom expression) 0-n
4980 # zoomTo (atom expression) 0*n
4981 # zoomTo (atom expression) 0/n
5023 # property_x = n.m
5109 # s += "x_"+i+"\ty_"+j+"\t"+func(i,j)+"\n"
5153 # adds isosurface HOMO/LUMO [+/- n]
5156 # bug fix in isosurface contour -n going WAY back to before 10.9.60
5167 # adds TRAJECTORY n command -- like FRAME or MODEL, but never more
5212 # mo HOMO [+/- n]
5213 # mo LUMO [+/- n]
5307 # isosurface MODEL n
5308 # pmesh MODEL n
5533 # x = n
5576 # CHANGE: default string value for a bitset is now the ({n:m})
5633 # Implements ({i j:k m n}) bitset option across all commands
5715 # ATOM EXPRESSION ITEM SELECTOR [n]
5759 # xyzFile = "" + {selected}.size + "\n\n" + {selected}.label("%a %x %y %z")
5768 # pdbAtomData = {selected and not hetero}.label("ATOM %5i %-4a%1A%3n %1c%4R%1E %8.3x%8.3y%8.3z%6…
5769 # pdbHeteroData = {selected and hetero}.label("HETATM%5i %-4a%1A%3n %1c%4R%1E %8.3x%8.3y%8.3z%6…
5773 # molFileData = "line1\nline2\nline3\n"+(""+{selected}.size)%-3+(""+{selected}.bonds.size)%-3+" 0 …
5784 # var info = jmolGetPropertyAsJavaObject("evaluate", '"" + {molecule=1} + "\n\n" + {molecule=1}.la…
5789 # You can select atoms from an atom expression using [n].