Lines Matching full:carbon
31 # bug fix: connected(0, {carbon}) not working
316 # new feature: set quaternionFrame "a" -- alpha-carbon-ONLY straightness. see 1JGQ
880 …nFrame</b> as "C" (alpha-carbon based), "P" (carbonyl-carbon based), or "N" (amide-nitrogen based)…
1588 # {atomno=3}.element = 6 # set atom 3 to carbon
3046 # new feature: settable Van der Waals radius using {carbon}.vanderwaals = 1.7
4061 # select (carbon and valence != 4)
5365 # x = {carbon}[5].property_test
5366 # x = {carbon}.property_test.min
5367 # x = {carbon}.property_test.max
5495 # 1.0 + {carbon}.xyz ==> 1 + distance from {0 0 0} to {carbon} center
5496 # {carbon}.xyz + 1 ==> {carbon} center point offset by {1 1 1}
5498 # x = {carbon}.xyz * {1 0 0} ==> (dot product)
5500 # Now x is the average x coordinate of carbon
5540 # y = {carbon}.xyz
5547 # x = {carbon}[3][5]
5551 # x = {carbon}[3][5]
5556 # x = {carbon or oxygen}.bonds
5590 # xAtoms = connected(3, {carbon})
5591 # xBonds = connected(1.3,2.5,"single", {carbon} {oxygen})
5597 # adds distance({carbon},{oxygen})
5598 # adds angle({carbon}[4],{oxygen}[3], {nitrogen}[2])
5694 # degUnsat = ({carbon} * 2 + {nitrogen} + 2 - {hydrogen}) / 2
5707 # message %{{carbon}.x}
5720 # x = {carbon}[3] # the third carbon atom
5721 # x = {carbon}[3][5] # the third through fifth carbon atoms
5722 # x = {carbon}[3][0] # the third through last carbon atoms
5726 # select (carbon)[3] # the third carbon atom