Lines Matching defs:seq

116     var $seq;
132         unset($this->seq);
256         $this->seq[0]= $yoff - 1;
265                     $ymids[$i][$chunk-1] = $this->seq[$i];
275                     if ($switch && $y > $this->seq[$k-1]) {
276                         USE_ASSERTS && assert($y < $this->seq[$k]);
279                         $this->in_seq[$this->seq[$k]] = false;
280                         $this->seq[$k] = $y;
307         if ($end == 0 || $ypos > $this->seq[$end]) {
308             $this->seq[++$this->lcs] = $ypos;
316             if ($ypos > $this->seq[$mid])
322         USE_ASSERTS && assert($ypos != $this->seq[$end]);
324         $this->in_seq[$this->seq[$end]] = false;
325         $this->seq[$end] = $ypos;