phpdocs, reformatting

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Rephrase description of io_replaceInFiles to be clarify use of regex

Abort io_replaceInLine when the search parameter is empty

Minor Refactoring
- put test comments in more appropriate spot
- move appending replacement line alongside its search/delete code

add anchors when constructing pattern from a non-regex oldline

Upgrade to jQuery 1.11.3 and jQueryUI 1.11.4 closes #1175

Refactor code to make it simpler.
The changes should also:
- fix unlikely edge case when replacement line is the same as the
old line (would have resulted in timeout)
- reduce memory footprint
- av

Refactor code to make it simpler.
The changes should also:
- fix unlikely edge case when replacement line is the same as the
old line (would have resulted in timeout)
- reduce memory footprint
- avoid applying string search beyond maxlines replacement limit

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update confToHash() inline documentation for new parameter

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avoid accessing nonexistant array key. fixes #1165

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Define the negation character in a constant

Ensure single value negation is not affected by white space
differences

Ensure filtering only removes empty string values
(not other values which PHP evaluates to false)

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Support negating of config values include earlier in the cascade
To negate a config value, prefix the value with an '!'.

E.g. to disable recognition of the gopher scheme
!gopher

This applies to:
-

Support negating of config values include earlier in the cascade
To negate a config value, prefix the value with an '!'.

E.g. to disable recognition of the gopher scheme
!gopher

This applies to:
- scheme
- stopwords

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Add filtering to remove blank entries from key/value config retrieval
This applies to:
- acronyms
- entities
- interwiki
- mime
- smileys